To capture information from a common microscope nomenclature. Pythex provides quick way to test your regular expressions.A helpful quick reference can be found here.A more extensive explanation of regular expressions can be found.There are a fewĬlasses of metacharacters, partially listed below. Text-Regular expressions: Used to load image (or movie) files that matchĬombinations of metacharacters and literal characters.The search for the text is case-sensitive. The files that contain that text exactly will be loaded and given the name you specify. The specific text that is entered will be searched for in the filenames and Text-Exact match: Used to load image (or movie) files that have a particular piece of.The same is true for the FLEX file format (used by Evotec Opera automated microscopes). tif,tiff,flex,zvi movies: A TIF/TIFF movie is a file that contains a series of images as individual frames.from confocal microscopy, and is a special version of the TIF format. stk movies: STKs are a proprietary image format used by MetaMorph (Molecular Devices).mov files are not supported on 64-bit systems. Uncompressed AVIs are supported supported MOVs are listed here. avi,mov movies: AVIs (Audio Video Interleave) and MOVs (QuicktTime) files are types of movie files.Uncompressed file formats are also fine for image analysis (e.g. Other file compression formats retain exactly the original image information but inĪ smaller file ("lossless") so they are perfectly acceptable for image analysis (e.g. Some methods of file compression sacrifice image quality ("lossy") and should be avoided for automated image analysis individual images: Each file represents a single image.The files are opened as a stack of images and each image is processed individually, although TrackObjectsĬan be used to relate objects across timepoints. See also the Input modules, LoadData, LoadSingleImage, SaveImages.ĬellProfiler accepts the following image file types. Height, Width: The height and width of the current image.Scaling: The maximum possible intensity value for the image format.Metadata: The metadata information extracted from the path and/or filename, if requested. ![]()
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